Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many g...RetrotransposonsNon-Retrovirus Retrotransposons ( LINES ) Currently up to 50% of the human...2210 days ago
2868 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence rea...II) and Oxford Nanopore flow cell technologies (MinION). RE...oid sequence of an individual human, and metagenomics assemblies...s we see the program yields excellent results both on bacterial...articularly tested for single cell...2684 days ago
2488 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment...varrogomez/phy-mer LAVA Genotyping of known SNPs (dbSNP and Affymetrix's Genome-Wide Human...2370 days ago
2350 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00&rsqu...s a large population of input cells Useful for comparative tran...are the useful links: Single Cell RNAseq data analysis Tutorial...-seq data with Bioconductor SCell: single-cell RNA-seq analysis...2349 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which...different than with ordinary mapping. If a genome (say, huma...But if you want to determine whether reads are mouse or human...2313 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathema...d.de/chair/projects/BioMiner Cell Illustrator Petri nets...ological networks http://www.cellillustrator.com COPASI Analy...://pixie.princeton.edu/pixie CellPublisher Interactive represe...ene mapping on a reference or human...2287 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improving a...ab.ucsd.edu/star/browser SVA Software for annotating and visualizing sequenced human...2282 days ago