Results for "human reference genome"
Top-level pages
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and...ta/LTR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...ourceforge.net/ REPuter http://www.genomes.de/ RetroMap http://www.bu...2276 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that al...view of the workflow which includes Transcriptome/ Genome alignment, Differential expre...ering, Venn diagrams, CVA, UMI support and elastic genome browser used in RNA-Seq workf...2266 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual moveme...NA must enter the host nucleus, integrate into the genome, and in more complex organism...otential for genetic incompatibility with the host genome and mismatch between the nich...852 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anyth...ion (PDF, HTML, TEXT) (2.x) Python 2.7 quick reference - New Mexico Tech (2.7)...Downey (2nd Edition) (PDF, HTML) Web2py: Complete Refere...2257 days ago
Some useful Bioinformatics links
...cs/article/30/18/2559/2475628 Reference-free SNP detection: dealing w...-scale scaffolding of de novo genome assemblies based on chromatin...ed on the FMD-index for large genomes https://github.com/lh3/ferm...oter_tutorial//Tutorial/CustomGenomes/CustomGenomes.html https://...2243 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key ch...bstitution on the structure and function of a human protein using straightforward...s well as insertion/deletions variants in the human genome”2205 days ago
- $ sudo apt-get install python-numpy python-...rue, outdir='test/run1', overlap=0.8, reference='', resume=False, threads=4,...11:29:18 2018] Reduction...#file name genome size contigs heterozygous siz...35 2018] Final reduction...#file name genome size contigs heterozygous siz...
2192 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling us...ired reads" or "Toward almost closed genomes with GapFiller". There are a...ake a look at the IMAGE tool: http://genomebiology.com/2010/11/4/R41...'t interested in assembling the full genome, just the 100 kb part you're...2167 days ago
Convert VCF to tab-deilimited table
Performed with GATK : java -Xmx8g -jar GenomeAnalysisTK.jar \ -T VariantsToTable \ -R reference.fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o reference_genomes_GT.table multiple_sample.vc...2184 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn ma...DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabula...nce id 2. sseqid subject (e.g., reference genome) sequence id 3. piden...2140 days ago
