Results for "improved"
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...line Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the speci...3026 days ago
Bioinformatics tools and software
...nment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity measures. UCHI...2881 days ago
OPERA : Optimal Paired-End Read Assembler
..., smaller memory footprint). We therefore encourage you to download and use our latest version: OPERA-LG. In our benchmarks, it has significantly improved corrected N50 and reduced the...2815 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assemb...2718 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...wrapper/tool that can accept any number of sequence (FASTA) files containing assembled contigs of any length in Multi-FASTA format to produce an improved contig set based on OLC based...2713 days ago
Enrichr: a comprehensive gene set enrichment analysis
...ated gene sets from 102 gene set libraries. New features have been added to Enrichr including the ability to submit fuzzy sets, upload BED files, improved application programming inter...2585 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...riginal assembler. iCORN, that enables errors in the consensus sequence to be corrected by iteratively mapping reads to the current assembly. An improved version, especially correctio...2569 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...aired reads of three bacterial genomes. Our algorithm constructs a comparable number of scaffolds, but makes fewer errors. This result is further improved when additional data, in the...2559 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing th...ructure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel proces...2303 days ago
Genome U-Plot: a whole genome visualization
..., amplifications, and chromoanagenesis events. The main features of the Genome U-Plot are its layered layout, its high spatial resolution and its improved aesthetic qualities. h...2142 days ago
