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...onella serotypes. RATT is able to transfer any entries present on a reference sequence, such as the systematic id or an annotator's notes; such information would be lost in a de novo an...3010 days ago
UCSC Genome Browser and Blat software !
...vailable for all uses: - kent/src/utils (includes big* tools) - kent/src/lib - kent/src/hg/autoSql - kent/src/hg/autoXmlFor information about commercial licensing of...3000 days ago
Ensembl comparative genomics resources
...ucture is extensively reused for the analysis of non-vertebrate species by other projects including Ensembl Genomes and Gramene and much of the information here is relevant to these pro...2989 days ago
- ...VCF. These file formats are defined in the Hts-specs repository. See especially the SAM specification and the VCF specification. Note that the information on this page is targeted at e...
2928 days ago
RACA: Reference-Assisted Chromosome Assembly
...ithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome information and paired-end reads. http:/...2951 days ago
REAPR: a universal tool for genome assembly evaluation
...on the error calls. The software requires as input an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage...2951 days ago
- ...ese organisms, AccNET create a bipartite network compatible with common network analysis platforms. AccNET collects phylogenetic and functional information in a network improving the an...
2767 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2907 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...aria is written in C++ and Python and is available at http://www.ab.wur.nl/cnidaria. Contact: Saulo Aflitos - sauloal@gmail.com Supplementary information: Supplementary data are avail...2880 days ago
- ...nts and to facilitate prioritization of critical loci for important cellular functions. With the increasing diversity and complexity of genomic information and public ontologies, making...
2869 days ago
