Results for "input"
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...mance of three statistically-based variant detection tools:* SAMtools: Mpileup* GATK: Unified Genotyper* FreeBayesEach of these tools takes as its input a BAM file of aligned reads a...3662 days ago
Barrnap: Bacterial ribosomal RNA predictor
...upports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output. It...2559 days ago
- ...ion among strains, including large event detection Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read a...
3018 days ago
- ...sis of larger structural features of chromosomes, their correlation to genomic and epigenomic features, and on comparative studies. It uses simple input and output formats and can th...
3015 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it implements a...2960 days ago
REAPR: a universal tool for genome assembly evaluation
...l inspection. It reports mis-assemblies and other warnings, and produces a new broken assembly based on the error calls. The software requires as input an assembly in FASTA format a...2960 days ago
- ...a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimize quality while keeping costs low. Currently it takes as input Illumina reads of length 250...
2948 days ago
- ...n contain IUPAC wildcard characters. Also, paired-end reads and even colorspace data is supported. If you want, you can also just demultiplex your input data, without removing adapte...
2924 days ago
- ...r database identifiers or annotations. To use db2db select the input type of your data, changing the input type automatically changes th...to be removed. Clicking on submit then returns a table of your inputs matched against all the outp...
2903 days ago
- ...eal with base-pair resolution data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome bisulfite sequencing data if proper input format is provided.
2902 days ago
