Results for "insert"
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REAPR: a universal tool for genome assembly evaluation
...ly in a BAM file. Mapping information such as the fragment coverage and insert size distribution is analysed...e mis-assemblies. REAPR works best using mapped read pairs from a large insert library (at least 1000bp). Ad...2965 days ago
- ...s comprehensive, and integrates read quality, mate pair orientation and insert length (for paired-end reads)...n both single and metagenomic assemblies, including single-base errors, insertions/deletions, genome rearran...
2946 days ago
Hagfish - assess an assembly through creative use of coverage plots
...encing experiment. Hagfish requires a reference sequence and a paired end re-sequencing data set. Hagfish has more power the larger the insert size of the paired end librar...2921 days ago
- ...genome assembler and any NGS read mapper that supports SAM format. Other features include support for multiple libraries and an option to estimate insert size distributions from data....
2868 days ago
- ...onfig generates a configuration file that notably specifies the average insert size of the mate-pair library...s, or when they run out, single copy contigs, and ii) the small_contig_inserter, which inserts the small co...
2868 days ago
- The objective of this activity is to help you understand how to run Velvet in general, how to accurately estimate the insert size of a paired-end library through the use of&...
2719 days ago
- ...the second read of the read pair; -i) (Comma separated list of) insert size(s) of the library(-ies);...p; -s) (Comma separated list of) library(-ies) standard deviation(s) of insert size(s); -t) Bundle t...
2715 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...ing and alignment of mate pair read pairs to a reference genome is a challenging and time consuming process for most NGS alignment programs. Large insert sizes, introduction of librar...2713 days ago
RGFA: powerful and convenient handling of assembly graphs
...f a sequence, using information not available to the assembler. We illustrate a use case, in which the assembly of a repetitive metagenomic fosmid insert was completed using a script...1582 days ago
