Results for "iontorrent data"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...ory saving and convenience of data inquiry, high-throughput short reads data is always initially formatted...wever, assembling metagenomic datasets has proven to be computat...ide Assembler for Metagenomic Data SFA-SPA is a suffix array...me high-throughput sequencing datasets. SPAdes 3.6.2 &ndash...2697 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of...endif 5. Larger example: NOTE: NEVER ANY DATA DECLARATIONS IN PSEUDOCODE...iscussed ahead) in your pseudocode. Do not include data declarations in your pseudoco...2671 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends o...erefore the fragment size distribution can be learned empirically for each WGS data set separately.concordant rea...2534 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl framework...nbsp;- Perl binding for Redis database pplu/aws-sdk-perl -...open source repository garu/Data-Printer - colored pretty...ver for the MySQL and MariaDB databases beide/Bootimg-scripts&n...plication that serves KeePass database entries on a web frontend...2501 days ago
- It is often necessary to import sample textbook data into R before you start worki...k = loadWorkbook("mydata.xls") > df ...ocumentation > mydata = read.spss("myfile...code samples above assume the data files are located in the R&nb...
2501 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two diffe...of coding sequences, for discovery of new genes and (by reference to sequence data banks) for discovery of ident...2474 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rap...of transcripts using RNA-seq data (uses k-mers) https://c...aplogroup classifier from NGS data (k-mer based) Software (Pyth...from unassembled raw sequence data from whole genome sequencing...2383 days ago
- ...ve both Illumina and Nanopore data, then SPAdes remains a good option...equired for MDA (single-cell) data --meta this flag...line for plasmid detection --iontorrent this flag is required for IonTorrent data --test...
2363 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in...the useful links: Single Cell RNAseq data analysis Tutorial A step-by-...level analysis of single-cell RNA-seq data A step-by-step workflow for...models applied to single-cell RNA-seq data separate biological drivers f...2362 days ago
- RNA-sequencing (RNA-seq) has a wide variety of a...iew all of the major steps in RNA-seq data analysis, including experimen...survey of best practices for RNA-seq data analysis RNA-seq workflow: g...EBI RNA-Seq exercise An open RNA-Seq data analysis pipeline tutorial wi...
2362 days ago
