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Results for "json parsing"

Bio-Scripts

• • Jit@jit.aber

  

  Create a conda environment !

  JitMeta (base) ➜ JitMeta conda create --name JitMetaENV Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1227 days ago

• • Jit@jit.aber

  

  Install grabseqs with conda !

  (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1227 days ago

• • Aaryan Lokwani@aaryan

  

  Install Perl Locally !

  # To follow these instructions, we'll assume your system admins have already installed these essentials: # Debia..._BASE/perl-5.24.1/bin/perl - --notest -l $PERL_BASE/perl-5.24.1 App::cpanminus JSON::P...

  2155 days ago

• • Surabhi Chaudhary@surabhi

  

  Python script to download covid genome !

  #!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.or...'text').read().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/allseq.json",...

  1147 days ago

• • Neelam Jha@neelam

  

  Install NCBI entrez-direct and esearch using conda !

  $ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 13.9-pl5262he881be...

  1112 days ago

• • LEGE@lege

  

  Install CANU with conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda/label/cf201901 canu Collecting package metadata (current_repodata.json):...

  1065 days ago

• • LEGE@lege

  

  Install Shasta using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda shasta Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1065 days ago

• • LEGE@lege

  

  Install CVSTK using codna !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda csvtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1065 days ago

• • LEGE@lege

  

  Install seqkit using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda seqkit Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1065 days ago

• • LEGE@lege

  

  Install Minimap2 using conda !

  vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda minimap2 Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1065 days ago

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