Results for "large"
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Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is a...415 days ago
- ...wgsim: dwgsim is a short read simulator that can generate synthetic reads from whole genome sequencing data. It is designed to simulate reads from large genomes and can handle comple...
415 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...azon AWS S3 bucket: s3://giab Ongoing and Future work:Current work in the GIAB Analysis Team is focused on establishing benchmark large indel and structural variant...1559 days ago
Comment on "Extract fasta sequence from a multifasta file with fasta header Ids"
perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file If you have a large number of sequences that you want to extract, then you most likely have the sequenc...1909 days ago
Comment on "Ancestral sequence reconstruction steps !"
Parallelization of MAFFT for large-scale multiple sequence alignmentshttps://academic.oup.com/bioinformatics/article/34/14/2490/49160992120 days ago
- ...hat was used to assemble the human genome. It is quite a complex beast that has HPC integration built in - though you can turn this off. However, large assembly jobs are best run in...
2174 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0 @ http://binf.gmu.edu:8080/GeneOrder4.0/2727 days ago
- ...e crush (identity, default 0.1) Larger FLOAT increases the number o...heterozygosity of the sample is high, large FLOAT may be s...ult 32) Seed length must be larger than reads length. Smaller I...
2798 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Orthology Detection Combining Clustering and Synteny for Very Large Datasets http://journals.plos.org/plosone/article?id=10.1371/journal.pone.01050152998 days ago
- ...der pathway graph with the mapped data. In addition, Pathview also seamlessly integrates with pathway and gene set (enrichment) analysis tools for large-scale and fully automated ana...
3036 days ago
