Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an a...3619 days ago
Commercial and public next-gen-seq (NGS) software
...h as the human reference genome. By default, BWA finds an alignment within edit distance 2 to the query sequence. C++ source. ELAND - Efficient Large-Scale Alignment of Nucleotide Datab...3513 days ago
Software packages for next gen sequence analysis
...as the human reference genome. By default, BWA finds an alignment within edit distance 2 to the query sequence. C++ source. * ELAND - Efficient Large-Scale Alignment of Nucleotide Datab...3237 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled...2281 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Variant Analysis Tool and Quantitative Trait; software packages for large-scale analysis of rare variants In...gorithm, cDNA position and interpretation LARVA Description: Large-scale Analysis of Variants in nonco...2903 days ago
Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular area? Check out the following agencies ... National Science Foundation: For the love of science!...2932 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation...2205 days ago
2863 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short r...2680 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort comparison routine variables. @ARGV The command-line args. Reg...2638 days ago