Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome asse...408 days ago
408 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to generate...1553 days ago
Comment on "Extract fasta sequence from a multifasta file with fasta header Ids"
perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file If you have a large number of sequences that you want to extract, then you most likely have...1903 days ago
Comment on "Ancestral sequence reconstruction steps !"
Parallelization of MAFFT for large-scale multiple sequence alignmentshttps://academic.oup.com/bioinformatics/article/34/14/2490/49160992114 days ago
2168 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0 @ http://binf.gmu.edu:8080/GeneOrder4.0/2721 days ago
2792 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Orthology Detection Combining Clustering and Synteny for Very Large Datasets http://journals.plos.org/plosone/article?id=10.1371/journal.pone.01050152992 days ago
3029 days ago