Results for "lift"
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LiftOver is a necesary step to brin...s to the same reference build. LiftOver can have three use cases:...ld 36 (UCSC hg 18) and hope to lift them over to NCBI build 37 (U...over different versions Run: liftOver input.bed hg18ToHg19.over...an exon For example: If you liftOver chr4:6497-6497 from hg19...2175 days ago
Bookmarks
- flo - same species annotations lift over pipeline Lift over is the process of transferring annota...rom one genome assembly to another. Usually lift over is done because there is...ile), transform the coordinates (e.g., with liftOver). https://github...
3022 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...than a minute and the whole pipeline with SV calling takes ~2 minutes. Intact ordering and orienting of contigs. Chimeric contig correction GFF lift-over Structural variant call...1860 days ago
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Liftoff: An accurate GFF3/GTF lift over pipeline
Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a standalone tool that takes two genome assemblies and...Tags: Liftoff, accurate, GFF3, GTF, lift, pipeline
1247 days ago
Comments
- ...pair of assemblies cannot be selected from the pull-down menus, a direct lift between them is unavailable. https://genome.ucsc.edu/cgi-bin/hgLiftOver
3024 days ago
