Hagfish - assess an assembly through creative use of coverage plots
...sequence and a paired end re-sequencing data set. Hagfish has more power the larger the insert size of the paired end library is. Quick links: Installation,Operation,...2912 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste...2865 days ago
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Statistical for biological research
...nificance column on statistics explains many key statistical and experimental design concepts. Other resources include an online plotting tool and links to statistics guides from oth...2746 days ago
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Laj: viewing and manipulating the output from pairwise alignment programs
...display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites containing...2628 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
...onsiders the optimal assignment of contigs in the output scaffolding to contigs in the reference scaffolding in the sense of the number of correct links. https://github.com/...2242 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...18(1), 527. Link Ghurye, J., Rhie, A., Walenz, B.P., Schmitt, A., Selvaraj, S., Pop, M., Phillippy, A.M. and Koren, S., 2018. Integrating Hi-C links with assembly graphs for chro...2157 days ago