Bash commandline to install Anaconda !
...://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh % Total % R...--:-- 2059k $ sha256sum Anaconda3-2019.03-Linux-x86_64.sh 45c851b7497cc14d5c...03-Linux-x86_64.sh $ bash Anaconda3-2019.03-Linux-x86_64.sh In order to cont...1555 days ago
Bash command to install Miniconda !
...m/miniconda/Miniconda3-latest-Linux-x86_64.sh Resolving repo.ana...Saving to: `Miniconda3-latest-Linux-x86_64.sh' 100%[==========..._libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main...libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_...1555 days ago
Bash command to install bwa, samtools, picard !
...nconsistency: - defaults/linux-64::numba==0.43.1=py37h962f231_0 - defaults/linux-64::anaconda==2019.03=py37_0..._anaconda_depends pkgs/main/linux-64::_anaconda_depends-2019.03...2 KB binutils_impl_linux-64-2.33.1| he6710b0_7...1555 days ago
Bash command to install GATK, Bedtools and SnpEff !
...e INSTALLED: certifi pkgs/main/linux-64::certifi-2019.11.28-py38_0...ch::gatk-3.8-7 pip pkgs/main/linux-64::pip-20.0.2-py38_1 pyth...be INSTALLED: bedtools bioconda/linux-64::bedtools-2.29.2-hc088bd4_...1555 days ago
1553 days ago
Install Nucmer on Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install mummer [sudo] password for jit: Reading package lists... Done Building dependency tree Read...1550 days ago
Install python pip and numpy on Linux / Ubuntu
...ownloading https://files.pythonhosted.org/packages/3a/5f/47e578b3ae79e2624e205445ab77a1848acdaa2929a00eeef6b16eaaeb20/numpy-1.16.6-cp27-cp27mu-manylinux1_x86_64.whl (17.0MB) 100...1550 days ago
Install miniasm in Linux / Ubuntu
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter$ sudo apt install miniasm Reading package lists... Done Building dependency tree Reading state information... D...1550 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free sof...-fpic STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu STRINGI_LIBS=-licu...c.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licuda...1550 days ago
1538 days ago