Results for "long read"
Top-level pages
An algorithm is a computable set of steps t...ch manner that from the outcome we can read a definite answer, "yes" or "...oids recomputing solutions that have already been computed. - The ma.../~jason/hmmlinks.html•http://www.breadfan.com/markov.html•http:...3961 days ago
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence fro...lly through phylogenetic trees. Due to the fact that evolution takes place over long...3961 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In books, we ca...and other people’s lives. Reading can make us more intellige...t, updated, imaginative. Without reading we wouldn’t know any...an Molecular Genetics, Andrew P. Read, Tom Strachan 1999, BIOS Scie...3932 days ago
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specificall...0);print}' input.txt OK now here's where to read this stuff properly explained...nd some nice explanations of those one-liners. After reading this you'll have a pretty...3927 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...m : The CG island is a stretch of DNA (usually longer than 200 bases) in which th...lands-in-vb6/ Fore detail understanding of HMM read this excellent tutorial http:...en.wikipedia.org/wiki/Viterbi_path For firther reading Wiki page http://en.wikipe...3840 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next gener...Compression of DNA sequence reads in FASTQ format. Deorowicz &...FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Pa...n FM-index of the 1.2 billion reads] Readjoiner: a fast and mem...Microindel detection in short-read sequence data. Krawitz et al,...3794 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
.../GemSIM Next generation sequencing read simulator http://sourceforge....generate collections of synthetic reads that reflect the diverse tax...r Simulation of protein evolution along phylogenies under structure-b...n of molecular sequence evolution along phylogenetic trees. http://tr...3752 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools an...For knowledge about Linux and their importance amongst bioinformatician plesae read this article "An introduction...3720 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticia...c”)[rand 4] } 1..20'#Generates a 20 nucleotide long random residue.perl -le 'prin...0'#generate a string of ‘x’ 50 character long...3643 days ago
Next generation sequencing in R or bioconductor environment
...C-Seq packages including ShortRead, Rsamtools, rtracklayer, Geno...MotIV: Documentation ShortRead The ShortRead package provid...well as the incorporation of read coverage information obtained...a and annotation information along genomic coordinates HilbertVi...3639 days ago
