Results for "long reads"
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You are requested to please bookmark collection of bioinformatics tools, scripts, co...for raw sequence quality analysis and control with few of process for reporting reads quality statistical details,...3246 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivi...3236 days ago
Scaffolding of a bacterial genome using MinION nanopore sequencing
...studies. However, most genomes contain repeated DNA elements that are longer than the read lengths achie...easily resolved. A new generation of sequencers offering substantially longer reads is emerging, notably the Paci...3236 days ago
Simons Genome Diversity Project
Complete genome sequences from more than one hundred diverse human populations All...re sequenced to at least 30x coverage using Illumina technology. The sequencing reads were mapped and genotyped usi...1104 days ago
- ...tection Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA fi...consistencies between the input genome and the evidence in the reads. It then attempts to make imp...
3020 days ago
- HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads up to in-depth analyses. Impo...
3017 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the...
2990 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute...y to process large volumes of RNA-seq reads. Trinity partitions the seque...s in parallel, tracing the paths that reads and pairs of reads take withi...ike so: Trinity --seqType fq --left reads_1.fq --right reads_2.fq --CPU...2977 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2963 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophore...
2963 days ago
