Results for "long reads"
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segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to det...gth and is able to map primer- or polyadenylation contaminated reads correctly. segemehl imp...2929 days ago
- ...from your high-throughput sequencing reads. Cleaning your data in this way is often required: Reads from small-RNA sequencing con...quencing adapter because the read is longer than the molecule that is se...don’t want them to be in your reads. Cutadapt helps with these t...
2926 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequence...de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads”. Genome Res. 2014...
2926 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the...2926 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major se...2918 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's re...esequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain seque...
2918 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences seq...alve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accep...
2178 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much seq...ames Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage...p), G = Haploid genome size (bp), and N = Number of reads. Source code on GitHub.2178 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes...SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substitution seq...
2885 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the...tain characteristics. A5-miseq will likely not work well with Illumina reads shorter than around 80nt, or reads where the base qualities are...
2829 days ago
