Perl script to reads and extract webpage contents !
use 5.010; use strict; use warnings; use WWW::Mechanize; my ($url) = @ARGV; die "Usage: $0 URL\n" if not $url; my $w = WWW::Mechanize->new; $w->get($url); say $w->content; #Run #jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ perl web.pl https://bioinformaticsonline.com1525 days ago
Pack a perl program with their dependencies on Ubuntu !
...online.com/snippets/view/41440/perl-script-to-reads-and-extract-webpage-contents...aluation of genome assembly software based on long readsBy BioStar 409 days ago Evaluationgenomeassemblysoftwarelongreads TGS technologies...1523 days ago
picard tools command to get some insert statistics
#picard tools to get some insert statistics to see whether our reads seem to be in the correct place #module load picard/2.0.1 java -Xmx16g -XX:PermSize=8g -jar $PICARD_HOME/picard.jar CollectIns...1348 days ago
1228 days ago
1227 days ago
1227 days ago
Download minikraken database !
(JitMetaENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/...mer_distrib minikraken2_v2_8GB_201904_UPDATE/hash.k2d #Check for pe reads #kraken2 --use-names --threads 4 --db minikraken2_v2_8GB_201...1226 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Archive::Extract; # # First, check i...::Multtest', 'File::Path', 'Statistics::Distributions', 'Getopt::Long'...1172 days ago
1170 days ago
Perl script to check modules installed !
#use strict; use warnings; use ExtUtils::Installed; # # First, check if all the required modules have been i...::Multtest', 'File::Path', 'Statistics::Distributions', 'Getopt::Long'...1167 days ago