Comment on "Long read assembly workshop !"
Long reads base bacterial genome assembly https://inf-biox121.readthedocs.io/en/2016/Assembly/practicals/07_Assembly_using_minasm+racon.html2036 days ago
Comment on "Long read assembly workshop !"
Long reads assembly PPT https://www.msi.umn.edu/sites/default/files/Badalamenti_PacBio_tutorial_12-10-2014.pdf2036 days ago
Comment on "Long read assembly workshop !"
Long reads assembler https://zenodo.org/record/345098/files/scientific_reports_assembly_long_reads%282%29.pdf2036 days ago
Comment on "HALC: High throughput algorithm for long read error correction"
Inputs Long reads in FASTA format. Contigs assembl...ed from the corresponding short reads in FASTA format. The initial short reads in FASTA format (only for -or...at right_reads.fa >>short_reads.fa). Using AlignGraph runHALC.py long_reads.fa contigs.fa [-options|...2088 days ago
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Comment on "Run miniasm assembler on nanopore reads !"
...d (ii) assembly. Designed for long, noisy reads, they do not have a correctio...semblies are contiguous (i.e. long) but very noisy (i.e. full of...minimap -Sw5 -L100 -m0 -t8 reads.fq reads.fq | gzip -1 > re...any contigs: grep ">" reads.fa | wc -l...2172 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...<reference_file> -d <reads_file> -o <output_sam_pa...xsec is also generated. -d, --reads STR Path to the reads file. -...nished, in the order of input reads. [false] -B, --batch-mb INT R...s value can be lowered if the reads are known to be accurate. [80...2289 days ago
Comment on "Does anyone have Nanopore latest updates?"
Some useful links on Nanopore: Decoding long nanopore sequencing reads of natural DNA:http://www.nature.com/nbt/journal/v32/n8/full/nbt.2950.html Related links:- Data from pocket-sized genome sequencer unveiled http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.147243405 days ago
Comment on "Does anyone have Nanopore latest updates?"
Long reads are here to rule. Thanks to Nick Loman from Birmingham UK, now we can have our first look at long reads from Oxford Nanopore. http://nextgenseek.com/2014/06/behold-oxford-nanopore-reads-are-here/3600 days ago