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Results for "low-coverage"

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• • Robert M Willioms@robert

  

  VirVarSeq: a low frequency Virus Variant detection pipeline http://bioinformatics.oxfordjournals.org/content/early/2014/08/31/bioinformatics.btu587.abstract #Pipeline #Variant #VirVarSeq

  3523 days ago

• • Jit@jit.aber

  

  #GATK and #Picard to filter low quality variants https://insidedna.me/tutorials/view/gatk-picard-filter-vcf-variants-snp

  2864 days ago

• • Jit@jit.aber

  

  Plot the coverage in R http://cnr.lwlss.net/SeqCoverage/ #BAM #SAM #R #NGS #Plot

  2851 days ago

• • Hardeep Kaur@hardeep

  

  Genome and coverage https://rtsf.natsci.msu.edu/_rtsf/assets/File/depth%20and%20coverage.pdf #Coverage #Genome #Depth #Reads #NGS

  2726 days ago

• • Shruti Paniwala@shruti

  

  Coverage R Plot http://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/ #R #Plot #Genome #Image #NGS #BAM

  2753 days ago

• • Jit@jit.aber

  

  #Contiguous and #accurate de novo #assembly of #metazoan genomes with modest long read coverage https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkw654

  2627 days ago

• • Robert M Willioms@robert

  

  Plotting nice coverage graph with R https://davetang.org/muse/2013/09/07/creating-a-coverage-plot-in-r/ #R #Plot #Coverage #NGS

  2589 days ago

• • Neelam Jha@neelam

  

  splitbed to splitcov https://github.com/cyaguesa/Rscripts/blob/master/splitbed_to_splitcov.R #R #Coverage

  2565 days ago

• • Jit@jit.aber

  

  #Zero coverage regions ~/Tools/bedtools2/bin/bedtools genomecov -ibam PvsH_aln_sorted.bam -bga | awk '$4==0' > ZERO_coverage_regions.txt

  2147 days ago

• • Abhimanyu Singh@abhimanyu

  

  #Intersect your bed data with coverage $ bedtools genomecov -ibam aln.bam -bga | awk '$4==0' | bedtools intersect -a cds.bed -b - -f 1.0

  2002 days ago

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