Results for "mapped"
Top-level pages
...protein interactions predicted on the sequence level, can be studied in more detail on the structure level. Single Nucleotide Polymorphisms can be mapped on 3D structures of proteins...3945 days ago
Commercial and public next-gen-seq (NGS) software
...a large string matching toolbox. POSIX. Zoom - ZOOM (Zillions Of Oligos Mapped) is designed to map millions...rst, candidate exons are built directly from the positions of the reads mapped on the genome (without any ab...3516 days ago
Software packages for next gen sequence analysis
...large string matching toolbox. POSIX. * Zoom - ZOOM (Zillions Of Oligos Mapped) is designed to map millions...rst, candidate exons are built directly from the positions of the reads mapped on the genome (without any ab...3240 days ago
- ...mapping short DNA sequence reads for comparisons of genomes from various individuals CoverageDepth The number of nucleotides from reads that are mapped to a given position of refere...
2866 days ago
Genome Assembly Tools and Software - PART1 !!
...ssembly Evaluation REAPR (Recognising Errors in Assemblies using Paired Reads) is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the...2683 days ago
Quick next generation sequencing (NGS) terms definition
...empirically for each WGS data set separately.concordant reads: a read pair is called concordant if they can be mapped to the reference genome as “expected”: (a) mapped to opposing strands where the...2520 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...human) contains an exact repeat somewhere, reads mapping to it will be mapped ambiguously. But if you want...;(ecoli reads)out_salmonella.fq (salmonella reads)clean.fq (unmapped reads)In this case, "int=t" m...2312 days ago
Some useful Bioinformatics links
...? - SEQanswers http://seqanswers.com/forums/showthread.php?t=26721 samtools(1) manual page http://www.htslib.org/doc/samtools.html How To Filter Mapped Reads With Samtools https://...2239 days ago
- ...list in a text file: cat file_list.txt | while read line; do cp "$line" complete_dataset/"$line"; done To split bam files into sets with mapped and unmapped reads: samtools view -F4 sam...
2215 days ago
