3959 days ago
Commercial and public next-gen-seq (NGS) software
...a large string matching toolbox. POSIX. Zoom - ZOOM (Zillions Of Oligos Mapped) is designed to map millions...rst, candidate exons are built directly from the positions of the reads mapped on the genome (without any ab...3531 days ago
Software packages for next gen sequence analysis
...large string matching toolbox. POSIX. * Zoom - ZOOM (Zillions Of Oligos Mapped) is designed to map millions...rst, candidate exons are built directly from the positions of the reads mapped on the genome (without any ab...3254 days ago
2881 days ago
Genome Assembly Tools and Software - PART1 !!
...ssembly Evaluation REAPR (Recognising Errors in Assemblies using Paired Reads) is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the...2697 days ago
Quick next generation sequencing (NGS) terms definition
...empirically for each WGS data set separately.concordant reads: a read pair is called concordant if they can be mapped to the reference genome as “expected”: (a) mapped to opposing strands where the...2534 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...human) contains an exact repeat somewhere, reads mapping to it will be mapped ambiguously. But if you want...;(ecoli reads)out_salmonella.fq (salmonella reads)clean.fq (unmapped reads)In this case, "int=t" m...2326 days ago
Some useful Bioinformatics links
...? - SEQanswers http://seqanswers.com/forums/showthread.php?t=26721 samtools(1) manual page http://www.htslib.org/doc/samtools.html How To Filter Mapped Reads With Samtools https://...2253 days ago
2229 days ago