Results for "matches"
Bio-Scripts
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = ){ chomp $line; i...2923 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Es...2922 days ago
- ...} = $i; $key = substr($seq, 0, $word); #treat Ns as mismatches unless ($key =~ m/N/)...= $i; $key = substr($seq, 0, $word); #treat Ns as mismatches unless ($key =~ m/N/...
2699 days ago
Create genome scaffolding with Perl
...ty my $qAliSize = $qEnd - $qStart; my $tAliSize = $tEnd - $tStart; my $sizeDif = abs($qAliSize - $tAliSize); my $pid = 100 * ($matches + $repMatches - ($qNumI...2314 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2146 days ago
Installing pb-assembly on Linux !
...bly -> pb-dazzler -> libgcc-ng >=4.9 - pb-assembly -> pb-falcon >=0.2.0 -> python-msgpack - pb-assembly -> mummer4 -> perl 5.22.0* Close matches found; did you mean one of th...2040 days ago
Samtools commands for bioinformatician !
...### sort reads by flag specified and show them # -f INT show flag matches samtools -f 4 sal_sej.bam | less # -F INT show reads excepting flag matches samtools -F 4 sal_sej.bam |...1609 days ago
Parse the NCBI taxonomy database with Perl !
...ach (@lineage) {print $_->scientific_name; print "\n";} my $decision =recheck_class (1974465, "metazoa"); print $decision; #It return 1 of matches otherwise 0 #case-insesitive...1178 days ago
