Results for "matrices"
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Nemo – A stochastic, individual-base, genetically explicit simulation platform
...ting very large grids. Input parameters' arguments may be specified in separate files. This is particularly convenient when specifying large matrices. Many adjustments have b...2786 days ago
- PATRISTICv1.0 is a java program that calculates patristic distances from large trees in a range of file formats and allows graphical and statistical interpretation of distance matrices calculated by other programs.
2476 days ago
DendroPy: a Python library for phylogenetic computing
...or phylogenetic computing. It provides classes and functions for the simulation, processing, and manipulation of phylogenetic trees and character matrices, and supports the reading and...2217 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices and tracks. Please take a look at the examples and d...n of the ways that it can be configured to explore and compare contact matrices. To load private data, HiGlas...2168 days ago
vcfR: a package to manipulate and visualize VCF data in R
...ll format (VCF) data. Functions are provided to rapidly read from and write to VCF files. Once VCF data is read into R a parser function extracts matrices from the VCF data for use wit...2032 days ago
pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks
pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot: bigwig bed (many options) bedgraph links (represented as arcs) Hi-C matrices (if HiCExplorer is installed)2017 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted for in the lin...1989 days ago
RepeatMasker compatible blast tool
...RMBlast supports RepeatMasker searches by adding a few necessary features to the stock NCBI blastn program. These include: Support for custom matrices ( without KA-Statistics ). S...1989 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly improved by Altschul et al. (1997). It is a ve...1986 days ago
