Results for "merged"
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...tition. 4. Combining all the assemblies of the partition (using velvet with kmer value of 31). 5. Finaly, re-assembling the whole dataset with the merged contigs or the combined conti...2724 days ago
CISA: Contig Integrator for Sequence Assembly
...ssemblies of superior contiguity and accuracy, compared with the assemblies generated by the state-of-the-art assemblers and the hybrid assemblies merged by existing tools. This tool...2708 days ago
Omega2: metagenome assembly pipeline
...by removing transitive edges and trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then merged to contigs and scaffolds usin...2501 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
...rate noise due to sequencing and do not incorporate effects from more esoteric sources of noise that may be present in real data ("dust", bubbles, merged clusters, sequence-heterogene...2360 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...an extensive report with several comparative quality metrics (both on assembly level and on the level of individual assembly points) constructs a merged combined scaffold assembly p...2330 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...ds. A full documentation on the pipeline can be found here. we recommend Trinity for the assembly. Trinity components should be merged with cap3. Our code to p...2176 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
...This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow n...2035 days ago
JASMINE: Jointly Accurate Sv Merging with Intersample Network Edges
...cross samples as a network, and uses a modified minimum spanning forest algorithm to determine the best way of merging the variants such that each merged variants represents a set of...683 days ago
