EFS: an ensemble feature selection tool implemented as R-package and web-application
...S (Ensemble Feature Selection) makes use of multiple feature selection methods and combines their normalized...tive ensemble importance. Currently, eight different feature selection methods have been integrated in EFS,...1572 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. W...1564 days ago
CLARK: Fast, accurate and versatile sequence classification system
...n the absence of a finished assembly for the reference genome), CLARK outperforms in classification speed and precision the best state-of-the-art methods. http://clark.cs.ucr.edu/Spa...1554 days ago
LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
...alities and other sources of errors inherent in sequencing (e.g. mapping or base/indel alignment uncertainty), which are usually ignored by other methods or only used for filtering....1551 days ago
Best Practices for Variant Calling with the GATK
....3. Genome Analysis Toolkit 03/19/15 Introduction to High-Throughput Sequencing data formats and methods Joel Thibault PDF Video...1547 days ago
medaka: Sequence correction provided by ONT Research
...sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods, whilst being much faster....1460 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
...dering the contigs and thus support the assembly process. This typically results in improved contig N50 when compared to current state of the art methods. For smaller vertebrate ge...1165 days ago
1387 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
...iprocal best hits (RBHs) which depends on performing a all-vs-all sequence comparison, usually using BLAST, to determine homology. However, these methods are computationally expensive...1374 days ago
1299 days ago