Integrated mRNA and microRNA transcriptome analysis in Strand NGS
...l carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of miRNA – mRNA interactions in...3194 days ago
BBTools for bioinformatician !
...match (=) and error rate is the number indicating substitution, insertion, or deletion (X, I, D). Exact matches when mapping small reads (e.g. miRNA) When mapping small RNA's...2267 days ago
2766 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2086 days ago
3557 days ago
Next generation sequencing in R or bioconductor environment
...experiments. It includes functions to retrieve the sequences around peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features such as mo...3621 days ago
Commercial and public next-gen-seq (NGS) software
...r NGS, microarray, and qPCR data analysis. Streamlined analysis workflows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expression, Copy Number, Alle...3515 days ago
Research Fellow @ Mendel laboratory
...The candidate will be mainly in charge of developing research on a range of hot applications and projects, dealing with microarrays, RNA-Seq and miRNA-Seq data. Main activities wil...3810 days ago
Bioinformatic/computational postdoc at South Dakota State University
...Science team with research focus in bioinformatic and molecular network analyses of high throughput data (transcriptomic, proteomic, metabolomics, miRNA). The individual will be inte...3704 days ago
Computational Structural Biology Lab IITKGP
...thod for structure prediction. Dynamics of protein-RNA interactions and prediction of RNA binding site in proteins. Study of miRNAs and development of algorithms for miRNA and traget prediction. Hom...3227 days ago
Integrated mRNA and microRNA transcriptome analysis in Strand NGS
Using a nasopharyngeal carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of miRNA – mRNA interactions in regulatory networks.Read the application note on Integrated mRNA and microRNA transcripto...Tags: mRNA, miRNA, transcriptome, NGS data analysis, next generation sequencing, Strand NGS
3194 days ago