Results for "miRNA"
Blogs
Integrated mRNA and microRNA transcriptome analysis in Strand NGS
...l carcinoma case study, this paper highlights the integrated transcriptome analysis capabilities of Strand NGS demonstrating the identification of miRNA – mRNA interactions in...3200 days ago
BBTools for bioinformatician !
...match (=) and error rate is the number indicating substitution, insertion, or deletion (X, I, D). Exact matches when mapping small reads (e.g. miRNA) When mapping small RNA's...2274 days ago
Bookmarks
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA)...four different mappers, create differential gene (miRNA) expression profiles and clus...
2773 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2092 days ago
Files
- ...get. One way is to look the relationships between mRNA, methylation and miRNA data of patients with differe...pathological conditions (cancer vs control either with inhibitor/not). MiRNA is small RNA molecules known...
3564 days ago
Top-level pages
Next generation sequencing in R or bioconductor environment
...experiments. It includes functions to retrieve the sequences around peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features such as mo...3628 days ago
Commercial and public next-gen-seq (NGS) software
...r NGS, microarray, and qPCR data analysis. Streamlined analysis workflows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expression, Copy Number, Alle...3522 days ago
- +2 more Top-level pages
Wire posts
Opportunity posts
Research Fellow @ Mendel laboratory
...The candidate will be mainly in charge of developing research on a range of hot applications and projects, dealing with microarrays, RNA-Seq and miRNA-Seq data. Main activities wil...3817 days ago
Bioinformatic/computational postdoc at South Dakota State University
...Science team with research focus in bioinformatic and molecular network analyses of high throughput data (transcriptomic, proteomic, metabolomics, miRNA). The individual will be inte...3710 days ago
- +2 more Opportunity posts
ResearchLabs posts
Computational Structural Biology Lab IITKGP
...thod for structure prediction. Dynamics of protein-RNA interactions and prediction of RNA binding site in proteins. Study of miRNAs and development of algorithms for miRNA and traget prediction. Hom...3233 days ago
Tags
miRNA seed site determination in target mRNA?
Dear friends, While reading an article ("miR-143 is downregulated in cervical cancer and promotes apoptosis and inhibits tumor formation by targeting Bcl-2") I encounterd that they give seed site of miRNA but I do not understand how they achieve. Is there any method or tool to get any estimation...Tags: miRNA, mRNA, seed site, blast, nucleotides
3752 days ago
- +4 more Tags
