Results for "micro RNA"
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RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Inst...ruction of transcriptomes from RNA-seq data. Trinity combines th...ly to process large volumes of RNA-seq reads. Trinity partitions...o: Inchworm assembles the RNA-seq data into the unique sequ...ull-length transcripts for alternatively spliced isoforms, and t...2966 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...SAM/BAM alignment files Visualizing data in a genome browser RNA-Seq De novo transcript disco...sis with R/Bioconductor Clustering of large expression datasets (microarray or RNA-Seq) Microarray Basic analysis of A...2932 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplica...2932 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in...are pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and annotating their functio...2931 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairw...seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. Another simple, but interest...2926 days ago
- Cutadapt finds and removes adapter sequences, primers, pol...data in this way is often required: Reads from small-RNA sequencing contain the 3&rsqu...er sequence. Poly-A tails are useful for pulling out RNA from your sample, but often y...
2915 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing mach...It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy exce...
2907 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can d...
2820 days ago
- Gene finding in eukaryotic genomes is notoriously difficul...eMark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervised tr...quires supervised training and uses information from RNA-Seq reads in the prediction s...
1952 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comp...ce alignments and co-variation information.R4RNA is the R package powerin...tomized figures and scripting. http://www.e-rna.org/r-chie/plot.cgi?eg=single
2804 days ago
