Software packages for next gen sequence analysis
...is Package * MACS - Model-based Analysis for ChIP-Seq. MACS empirically models the length of the sequenced C...Se is a method aimed at using RNA-Seq short reads to build de novo gene models. First, candidate exons are b...3257 days ago
Comprehensive list of visualization tools for biological pathways
...wing of chemical structures http://bina.unipax.info/ BioTapestry Interactive tool for building, visualizing and sharing gene regulatory network models over the web http://www.biot...2302 days ago
Binding Site Prediction in Protein !
...s. Ligand Binding Sites 3DLigandSite The server utilizes protein-structure prediction to provide structural models of the binding site. Ligands...2217 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ence file: Ensembl Release 75 Output: covariance matrix for regression models mtSet Description: Cu...: Package program, command line interface; constructs linear prediction models; Best Linear Unbiased Predict...2924 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...ribute to identifying and understanding the basic defect in Huntington’s disease. Areas of interest include trinucleotide expansions, animal models, gene therapy, neurobiology a...2953 days ago
Genome Assembly Tools and Software - PART1 !!
...ification of transcriptomes are outstanding problems in functional genomics. Rnnotator is an automated software pipeline that generates transcript models by de novo assembly of RNA-Se...2700 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...Phylogeny of species based on NGS reads using alignment-free sequence dissimilarity measures d2* and d2 S under different Markov chain models (using k-words) R packa...2386 days ago
Single Cell RNAseq data analysis tutorial !!
...f Temporal Gene Expression during Heart Development http://www.cell.com/developmental-cell/fulltext/S1534-5807(16)30682-7 Scalable latent-factor models applied to single-cell RNA-se...2365 days ago
Bioinformatics Web Application Development with Perl
...t versions are exploring high-scalability, event-based request handling models. Dancer The Dancer&nbs...plicated of SQL from your code, leaving you to manipulate your business models instead of the small details...2336 days ago
List of visualization tools for network biology
...velopment of algorithms, visual encodings, interaction techniques, data models and domain-specific visualiza...Web-based tool for integration of user-given stoichiometric metabolic models into a database collected fro...2303 days ago