Results for "motifs"
Blogs
List of gene ontology software and tools
...te of Computer Science, University of Tartu) g:GOSt retrieves most significant Gene Ontology (GO) terms, KEGG and REACTOME pathways, and TRANSFAC motifs to a user-specified group of...3717 days ago
List of motif discovery tools !
...ion system for conserved sequence motifs Use this web-based sequence...DILIMOT -- discovery of linear motifs in proteins Predict short li...mily (and DNA) domains, patterns, motifs, protein families, and functi...SITE pattern database for protein motifs. PRIDB -- Protein-RNA In...2001 days ago
Bookmarks
- ...the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, c...
3952 days ago
Method in Comparative genomics !!
...t novel methods for the systematic de novo identification of regulatory motifs. The methods do not rely on p...otif discovery. Based on the genome-wide conservation patterns of known motifs, we developed three conservat...2741 days ago
- +5 more Bookmarks
Pages
- ...ool of Natural Sciences BioComputing Division. Protein Sequence Alignment and Database Scanning Geoff Barton's review. Pattern matching and motifs Knowledge-based Analys...
3929 days ago
Virtual Bioinformatics Online Tutorial
...comparisonUniversite de) Rouen , France A Guide to Molecular Sequence Analysis National Hospital Univ of Oslo , Norway Distant homologies: motifs, patterns, profiles Inte...3929 days ago
Top-level pages
- ...Structural genomics tutorial: Comparative Genomics Tutorial: GENOME TUTORIAL: Tools and resources for identifying protein families, domains and motifs Bioinformatics Tools Ti...
3950 days ago
Useful Links for Bioinformaticians
...ogy, E. W. Myers Bill Pearson talks about Fasta Bioinformatics: Elementary Sequence Analysis, Brian Golding and Dick Morton Distant homologies: motifs, patterns, profiles A Guide...3138 days ago
- +3 more Top-level pages
News
- ...you. As well as GENCODE updates for human and mouse, we’ve also got loads of new fish. Plus, we have brand new transcription factor binding motifs, additional predictors of var...
2026 days ago
ResearchLabs posts
- ...nt programming, structure prediction in simplified protein models, investigation of protein energy landscapes, detection of RNA sequence/structure motifs, prediction and evaluation of...
3947 days ago
Groups
...the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, c...3909 days ago
Tags
MCAT: Motif Combining and Association Tool
This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER] [-c C][-s S] [-d] [-ff] [-v V]positive_seq negative_seq positional arguments:positive_seq the fasta file for the po...Tags: pipeline, find, motifs, fasta
1947 days ago
ChIPBase: open database for studying the transcription factor binding sites and motifs
ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data. Our database currently contains ~10,200 curated peak datasets derive...Tags: ChIPBase, open, database, studying, transcription, factor, binding, sites, motifs
866 days ago
