Results for "multiple fasta"
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...ommand line options. $ ./fastANI -h One to One. Compu...le reference genome: $ ./fastANI -q [QUERY_GENOME] -r [REFERENC...to Many. When there are multiple query genomes and multiple reference genomes: $ ./fastANI --ql [QUERY_LIST] --rl [REF...1096 days ago
Comment on "Sibelia: A comparative genomics tool"
...Sibelia -s loose <input FASTA file(s)> For example:...-s loose Helicobacter_pylori.fasta Important note -- "Sibelia" r...equence: 1. Header line -- FASTA header of the sequence (start...lia" performs computations in multiple stages. Every stage produc...1279 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...tory /data/output --prefix mygenomes genome1.fasta genome2.fasta genome3.fasta This exampl...nome1 from genome1.fsa). Header lines in the FASTA files should not contain ':'...r parse MAF output The output of Mugsy is Multiple Alignment Format (MAF).One...1280 days ago
- ...p godzilla genomeSize=1g -nanopore-raw reads/*.fasta.gz To restrict canu to only a...s created if needed. It is not possible to run multiple assemblies in the same dir...file with the -s option. Reads can be either FASTA or FASTQ format, uncompressed...
2093 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...and you need to map your FASTQ file against itself. So, if you have multiple FASTQ sequencing files, you h...170918_oly_pacbio_miniasm_reads.gfa 3 Convert miniasm output GFA to FASTA The FASTA file is needed to re-run mini...2162 days ago
