Results for "mummer"
Top-level pages
...algorithm that considers all combinations of possible exons for inclusion in a gene model and chooses the best of these combinations. The d MUMmer MUMmer is a system for rapidly align...3957 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ariant detection Versatile and open software for comparing large genomes. Kurtz et al, Genome Biol (5(2):R12, 2004. PubMedCentral [describes the MUMmer software for full-genome alig...3794 days ago
Commercial and public next-gen-seq (NGS) software
...and memory-efficient manner. Robust to INDELs and MrsFAST has a bisulphite mode. Authors are from the University of Washington. C as source. MUMmer - MUMmer is a modular system for the r...3534 days ago
Software packages for next gen sequence analysis
...nd memory-efficient manner. Robust to INDELs and MrsFAST has a bisulphite mode. Authors are from the University of Washington. C as source. * MUMmer - MUMmer is a modular system for the r...3257 days ago
Tools for Searching Repeats And Palindromic Sequences
...ophisticated repeat finding you will want to look at tools using Repbase for example: CENSOR CENSOR@GIRI CENSOR@EMBL-EBI RepeatMasker MUMmer (scan_for_match) Emboss...2226 days ago
Computational resources for TE discovery and TE detection
...er.org/ RepeatRunner http://www.yandell-lab.org/repeat_runner/index.html RepeatScout http://repeatscout.bioprojects.org/ repeat-match http://mummer.sourceforge.net/ REPuter ht...2289 days ago
Some useful Bioinformatics links
...ps://academic.oup.com/bioinformatics/article/28/4/495/212883 The MUMmer 3 examples http://mummer.sourceforge.net/examples/ MAF...s https://www.biostars.org/p/56246/ The MUMmer 3 manual http://mummer.sourceforge.net/manual/#nucme...2256 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate...nbsp;-I option in show-snps. This process (Racon -> MUMmer -> SNP table) solves the p...2125 days ago
