BLAST options, setting and defaults
...bsp;FASTA. To search nonplant datasets, try NCGR BLAST or NCBI BLAST. A fairly complete on-line guide to BLAST searching can be found at the NCBI BLAST Help Manual. For a theo...1967 days ago
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Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontolo...1926 days ago
Genome assembly forensics: finding the elusive mis-assembly
.... The software described is compatible with common assembly formats and is released, open-source, at http://amos.sourceforge.net. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2...1920 days ago
1708 days ago
RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler
...rder and orient the contigs. The updated version of RePS incorporates some of the ideas introduced by Phusion on clustering More at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1...1578 days ago
DMINDA2: an integrated web server for DNA motif identification and analyses
DMINDA (DNA motif identification and analyses) is an integrated web server for DNA motif identification and analyses More at http://bmbl.sdstate.edu/DMINDA2/ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086085/1548 days ago
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