Comment on "SPAdes hybrid genome assembly"
...cov_135.169_ID_22238 > single_contig.fa Finally, a quick comparison to the reference: sudo apt-get install mummer curl -s "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efe...2169 days ago
Comment on "Basic command-line to run BLAST"
...n_vs_Avaga_protein] wget ftp://ftp.ncbi.nlm.nih.gov/genomes/Homo_sapi...z--2018-03-14 10:21:39-- ftp://ftp.ncbi.nlm.nih.gov/genomes/Homo_sapi...esolving ftp.ncbi.nlm.nih.gov (ftp.ncbi.nlm.nih.gov)... 130.14.250.12...n_vs_Avaga_protein] wget ftp://ftp.ncbi.nlm.nih.gov/genomes/Mus_muscu...2239 days ago
Comment on "Download assemblies from NCBI"
User can also download with script http://bioinformaticsonline.com/snippets/view/33321/download-the-genome-from-ncbi-using-bash-scriptcommand2524 days ago
2567 days ago
Comment on "Structural variation: the hidden genomic treasure"
This paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479793/ provide many others tools and their comparative importance.2697 days ago
Comment on "SGA: String Graph Assembler"
Try this hierarchical genome assembly (HGA) assembler https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4779561/2700 days ago
Comment on "A Brief Bioinformatics Tutorial"
NCBI BLAST handbook http://www.ncbi.nlm.nih.gov/books/NBK279690/2876 days ago
Comment on "List of gene ontology software and tools"
Thanks for such a useful list of tools for GO study. I found FUNC: a package for detecting significant associations between gene sets and ontological annotations (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1800870/) also very useful.2968 days ago
2993 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
...me? What is reference annotation, how to download it etc. Here are some resources that I found useful:ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/reference/ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/E...3615 days ago