Awesome perl frameworks, libraries and software - PART 1
...ignment implementing an adaptive, iterative speech recognition and text alignment scheme that allows for the processing of very long (and possibly noisy) audio and is robust to trans...2497 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ssembly (fully resolved chromosome arms) from third-generation long and noisy reads (10 kbp) using a dimens...tware (Java) https://github.com/marbl/MHAP Miniasm Assembler of long noisy reads (SMRT, ONT) using the O...2379 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly...2338 days ago
Bioinformatics tools for genome assembly !
...read assembler that uses the Overlap-Layout-Consensus approach, suitable for PacBio and Nanopore data. Sparc: An assembler designed to handle noisy long reads from Nanopore sequ...294 days ago