Results for "nucleotide"
Top-level pages
...pretation of various types of data including nucleotide and amino acid sequences, pro...dash;protein interactions; analysing single nucleotide polymorphisms to hunt for gen...n more detail on the structure level. Single Nucleotide Polymorphisms can be mapped o...3957 days ago
List of bioinformatics open source projects/software.
...ary protein structure given assigned Residual Dipolar Coupling data SAM Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments Staden P...3766 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ect.org/src/contrib/archive/kernelpop/MaCS Markovian Coalescent Simulator http://www-hsc.usc.edu/~garykche/Mason A package for the simulation of nucleotide data. http://www.seqan.de/pro...3747 days ago
Perl one-liner for bioinformatician !!!
...d from a to z and number 0 – 9.perl -le 'print map { ("a",”t”,”g”,”c”)[rand 4] } 1..20'#Generates a 20 nucleotide long random residue.perl -le...3638 days ago
Commercial and public next-gen-seq (NGS) software
.... ELAND - Efficient Large-Scale Alignment of Nucleotide Databases. Whole genome align...CGSC. Paper is here. SOAP - SOAP (Short Oligonucleotide Alignment Program). A program...or aggressively assembling millions of short nucleotide sequences by progressively se...3528 days ago
Software packages for next gen sequence analysis
...* ELAND - Efficient Large-Scale Alignment of Nucleotide Databases. Whole genome align...SC. Paper is here. * SOAP - SOAP (Short Oligonucleotide Alignment Program). A program...or aggressively assembling millions of short nucleotide sequences by progressively se...3252 days ago
- Reformat is a member of the BBMap/BBTools package. It is a multipurpose tool designed for converting reads or other nucleotide data between different formats. It supports, and can inter...
2723 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...e detection and the classification of single nucleotide polymorphisms in transformed...NKO; can annotate SNPs, INDELs, and multiple-nucleotide polymorphisms; categorizes ef...acid predictions that are caused by multiple nucleotide variations; Uses existing ann...2918 days ago
Tools for Searching Repeats And Palindromic Sequences
...other hand; In genetics, the term palindrome refers to a sequence of nucleotides along a DNA (deoxyribonuclei...epeatMasker MUMmer (scan_for_match) Emboss Palindrome Other nucleotide repeat finding methods found...2221 days ago
- ...rmat. Text file format for storing genomic variants, including single nucleotide polymorphisms, insertions, de...sands or millions of sequences at once. DeepSequencing Techniques of nucleotide sequence analysis that increa...
2879 days ago
