Tags: Genetics, Amino Acid, Code, Genome, Nucleotide, RNA
3489 days ago
Tags: Blastn, BLAST, Nucleotide, Alignment, Database, NR, Contig, NGS
2886 days ago
Tags: IUPAC, codes, DNA, Nucleotide
2255 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies....Tags: fast, alignment-free, computation, whole-genome, Average, Nucleotide, Identity, ANI
2133 days ago
Tags: DNA, Nucleotide, Counter, tools, scaf, chromatogram
2042 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam # create an index first and then map ./minimap2 -d MT-human.mmi test/MT-human.fa ./minimap2 -a MT-human.mmi test/MT...Tags: minimap2, versatile, pairwise, aligner, genomic, spliced, nucleotide, sequences
2156 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can be efficiently compared. The tool includes funct...Tags: S-plot2, interactive, two-dimensional, heatmap, capture, similarities, dissimilarities, nucleotide, genomic, sequences
2056 days ago