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• • Shruti Paniwala@shruti

  

  Fasta sequence length: awk '/^>/ {if (seqlen){print seqlen}; print ;seqlen=0;next; } { seqlen += length($0)}END{print seqlen}' file.fa #Length #Linux #OneLiner

  2669 days ago

• • Jit@jit.aber

  

  NGS onliner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/subsetFASTAFASTAQ.html #OneLiner #NGS

  2570 days ago

• • Jit@jit.aber

  

  Perl OneLiner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/oneliners.html #Perl #Oneliner #NGS #Script

  2570 days ago

• • Jit@jit.aber

  

  Rename/number the multi-fasta file in ascending order. $ awk '/^>/{print ">" ++i; next}{print}' < Mix_assembly.fasta > Mix_assembly2.fasta #awk #oneliner

  2549 days ago

• • Rahul Nayak@rahul

  

  Unmasking the lower case values in genome. $ perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna #Genome #Unmask #Perl #Oneliner

  2533 days ago

• • BioJoker@biojoker

  

  Genome Mapping #OneLiner https://bioinformaticsonline.com/snippets/view/39310/one-liner-for-reads-mapping

  1838 days ago

• • Jit@jit.aber

  

  https://github.com/stephenturner/oneliners #Bash #Tutorial #OneLiner

  1668 days ago

• • LEGE@lege

  

  Count number of fasta sequence $ awk '/^>/ { f = !a[$0]++ } f' aaaa.fa > bbbb.fa #count #fasta #oneliner

  986 days ago

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