2348 days ago
2347 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (uplo...t the quality of functional information is not as good as RAST,...nd is not currently available for download or use outside of th...GG's internal annotation tool for K number assignment of KEGG G...lable for download and can be tested online via the MAKER Web Annotatio...2328 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n...t }'perl -alne '$t += /regex/ for @F; END { print $t }'perl -al...5; print $f' # Calculate greatest...werset -le '@l = (1,2,3,4,5); for (@{powerset(@l)}) { print "@$_...print $l }' # Print the shortest lineperl -ne '$s = $_ if $. =...2299 days ago
Awk for Bioinformatician and computational biologist
...file. $ awk '{print;}' data/test....follows: BEGIN { Actions before reading the file}{Actions for...2;}END{print "-------"}' data/test.tsvHeader,Sequencecontig1,ACT...o skip executing later blocks for a given line by using next key...i) print j"<="i[j]}' data/test.tsvcontig1<=1contig2<=1...2276 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language,...ofessionally, Python is great for backend web development, data...and http://bioinformaticsonline.com/discussion/view/459/py...lds with any values) High Performance Python (PDF) Hitch...;(2.6 - 2.x & 3.1 - 3.x) Test-Driven Web Development with P...2252 days ago
Some useful Bioinformatics links
...ement breakpoint reads | Bioinformatics | Oxford Academic https://academic.o...embler based on the FMD-index for large genomes https://github...o/Bandage/ Codon Optimization OnLine (COOL): a web-based multi-...tp://cgat.readthedocs.io/en/latest/recipes/metagenome_contigs_km...2238 days ago
Installing Bio::SCF perl module
...s check this http://bioinformaticsonline.com/blog/view/710/how-to-i...SET_BITS=64 -c -o example64.o test/...for cos in -lm... yeschecking for strdup... yesconfigure: creati...ion.Tpo" -c -o compression.o `test -f '../ztr/compression.c' ||...ype ‘long int’ [-Wformat=] sprintf(aname, "%.*s%s",...2215 days ago
2187 days ago
Ancestral sequence reconstruction steps !
...uckerkandl. Some early efforts were made in the eighties-n...tic signal, is possible to perform with Tree-Puzzle "http://www...combination 4.1- Phi-test,...ed groups. 4.3- RDP4 for download and installation on W...Clock, but is necessary Clock Testing: - This step is p...2176 days ago