Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of g...cid (DNA) replicationārelated fork stalling and template switching....onal and simulation framework for discovering SVs by paired-end...nbsp;http://compbio.cs.sfu.ca/software-variation-hunter Lumpy&...//sebatlab.ucsd.edu/index.php/softwa...2699 days ago
Important Journals, Blogs and Forums for Bioinformaticians
Journals. Most journals have RSS feeds for their current updates. Bioinformatics - RSS feed of current and advance online publications Genome Resea...ks, latest, most viewed, most forwarded. (Hit the RSS icon unde...current TOC and AOP Bioinformatics BMC Bioinformatics Br...2640 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases re...ation sequencing (PacBio or Oxford Nanopore). It detects all ty...combination of sequencing platforms. There are two pieces of software in this release: (1) a p...SMRT-SV provides an official software pa...2605 days ago
2527 days ago
String graph based genome assembly software and tools !
In graph theory, a string graph is an intersecti...f programs, which are used to form an assembly pipeline. SGA im...e contigs. The output of this software is a PDF report that all...of an assembly project, this software will help increase aware...nitigs to represent all the information i...2325 days ago
Installing Perl environment on Linux
By using plenv, you can easily install and switch among differe...ol and source code management software which can help you to do...d output (or sometimes STDOUT for short), and the other is a st...(STDERR). 1> is for STDOUT only, 2> ...archIO $ cpanm PerlIO::gzip For more in...2318 days ago
List of cancer genomics research web resources !
Major web resources for cancer genomics research CGHub https://cghub.ucsc.edu/ Compr...paper curation CPRG http://www.broadinstitute.org/software/cprg Interface for ca...wser https://genome-cancer.soe.ucsc.edu/ Clinical information;...2317 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequencing. Each...oolhttp://last.cbrc.jp/ LINKSSoftware tool for long read scaff...nanoCORRError-correction tool for nanopore sequence datahttps:/...om/jgurtowski/nanocorr NanoOKSoftware for nanopore data, quali...2317 days ago
How custom essay writing service work to provide essay papers that meets customers need?
Writing is more effective way to learn than reading. While writing you get more information and hence can improve y...nt likes to get a good essay, for getting good essay students m...te essay. There are many more online writing services available...r is very important to pass information t...2287 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap...s once. I have not tried that for bam output, only sam outputNote about alignment stats: For paired reads, you can find th...file Code: $ reformat.sh in=reads.sam out=reads....ach line showing the coverage for that fr...2267 days ago