SIMBA: a Genome Assembly Project Management System
...nformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also is open source tool, i.e., can be fre...1986 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
...tion, using vis.js javascript library (http://visjs.org/). All remarks and bugs are welcome on github : https://github.com/datastorm-open/visNetwork. Features Ba...1945 days ago
BLAST options, setting and defaults
...e Notes BLASTNBLASTPBLASTXTBLASTNTBLASTXPSIBLAST Gap opening penalty:cost to open a gap [integer] default = 5...no default Supported and Suggested Values for Gap Open and Extension in BLASTP, BLAS...1975 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-dev/biotite). This package is simple to use especially for the beginners in programming...1967 days ago
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Hawkeye: an interactive visual analytics tool for genome assemblies
...and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http...1953 days ago
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Genome assembly forensics: finding the elusive mis-assembly
...ight several assembly errors in both draft and finished genomes. The software described is compatible with common assembly formats and is released, open-source, at http://amos.s...1928 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX has been run on highly inbred genotypes of barley (Hordeum vulgare), tetraploid whea...1722 days ago