Results for "options"

Bio-Scripts

  • Retrieve NCBI GenBank records with a range of accession numbers

    ....nlm.nih.gov/entrez/eutils', retries => 0, maxRetries => 5, help => undef ); Getopt::Long::Configure('bundling'); GetOptions( 'q|query=s' => \$...

    2930 days ago

  • Install ATOM editor on Elemantory OS / Ubuntu

    ..., test, uninstall, unlink, unpublish, unstar, update, upgrade, view. Run `apm help ` to see the more details about a specific command. Options: --color Enable col...

    1190 days ago

  • Perl script to calculate N50

    ...opt::Long; use Bio::SeqIO; my $fasta_file; my $filter_length; GetOptions("fasta_file=s" => \$fasta_file, "length_filter=i" => \$filter_length); die "Usage: $0 [options] \t\t-f /path/to/fasta/file...

    2718 days ago

  • Create genome scaffolding with Perl

    ...o scaffold a genome =head1 SYNOPSIS ./psl_scaffolder.pl -query [options] =cut sub min { ($a..." " : "*"); } ############### Program starts here # set default options my @pslFiles = (); my $proj...

    2323 days ago

  • BloomFilter

    ...ect 'install' to 'INSTALL' [nyae]? n configure: WARNING: unrecognized options: --with-boost checking build....status: executing depfiles commands configure: WARNING: unrecognized options: --with-boost Making install...

    2166 days ago

  • Fastq-dump for SRA download

    ...git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fastq-dump [options] INPUT -A|--accession...Compress output using bzip2 Multiple File Options Setting these op...

    2140 days ago

  • Install Parrot Virtual Machine !

    ...ot Team jit@jit-HP-Pro-3335-MT:~/Downloads/parrot-8.1.0$ make jit@jit-HP-Pro-3335-MT:~/Downloads/parrot-8.1.0$ ./parrot -h parrot [Options] [] Options: -h --help -V --ver...

    1551 days ago

  • Running Transrate !

    ...and --right are given) 3. reference based (if --reference is given) Documentation at http://hibberdlab.com/transrate USAGE: transrate OPTIONS: --assembly= As...

    2137 days ago

  • Resume the MIRA assembler run !

    mira -r manifest_file Usage: mira [options] manifest_file [manifest_file ...] Options: -c / --cwd= directory Change working directory -r / --resume Resum...

    1749 days ago

  • Installing Porechop on Ubuntu !

    ...Porechop: a tool for finding adapters in Oxford Nanopore reads, trimming them from the ends and splitting reads with internal adapters Main options: -i INPUT, --input INPUT...

    2120 days ago