Foldit: Solve Puzzles for Science
Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Ce...2345 days ago
MeDuSa: a multi-draft based scaffolder
MeDuSa (Multi-Draft based Scaffolder), an algorithm for genome scaffolding. MeDuSa exploits in...om a set of (draft or closed) genomes from related organisms to determine the correct order a...2290 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that si...nd documentation (https://snakepipes.readthedocs.io/en/latest/) are available online.1820 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reporte...ll Systems, 2016), as well as additional dependencies noted below. Feel free to post your qu...2338 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Tr...the implementation of Interpolated Variable Orde...exploits compositional biases using variable order mo...predictions can be parsed into a 2-state 2nd order H...2328 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order t...2321 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization from one...n no easy way to visualise each TE or host species, and should be further analysed in order t...2312 days ago
Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results....2295 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
REGEN infers evolutionary events, including gene creation and deletion and replicon fission an...iently related, which will usually be the case for bacteria within the same taxonomic order.&...2270 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
we design a simple heuristic method to further revise our single reference-based scaffolding t...ilize multiple complete genomes of related organisms as references to more accurately order a...2270 days ago