CABOG: Celera Assembler with Best Overlap Graph
...jigsaw puzzle. The CABOG software was the first to accomplish many scientific goals. It was the first to assemble the genome of a multicellular organism (Drosophila melanogaster, 200...2545 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
...raph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism. Using AlignGraph AlignGrap...2208 days ago
Ranbow: a haplotype assembler for polyploid genomes
...phasing, Ranbow utilizes the assembled haplotypes to improve the accuracy of variant calling results and to infer the evolutionary history of the organism´s genome. Ranbow has three ma...2163 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like ge...1848 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
...ulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, supports biological particulars of model organism frequently used in E&R st...2044 days ago
KEGG Mapper – Reconstruct Pathway
...G PATHWAY mapping tool that assists genome and metagenome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms) annotated with KEGG Ortholo...1969 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
...technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with small genome size and gr...1712 days ago
Retrieving Taxonomic Information with R
...s on the powerful package taxize. Nevertheless, taxonomic information retrieval has been customized for the myTAI standard and for organism specific information retrieva...1709 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
..., MaxQuant). De Novo Searches: Experiments in which the organisms are unspecified ahead of tim...database (ex: using PEAKS, PepNovo). ProteoClade scales from two organisms to every organism in UniProt...1507 days ago
CSAR-web: a web server of contig scaffolding using algebraic rearrangements
...ccurately scaffold (i.e. order and orient) the contigs of a target draft genome based on a complete or incomplete reference genome from a related organism. CSAR-web can serve as...1484 days ago