2505 days ago
orthodotter: Synteny plots (oxford grid)
...n) between two points and min_nb_genes the minimal number of genes in a cluster to be valid. -o <file> : output file, default is stdout...2460 days ago
QuorUM: An Error Corrector for Illumina Reads
...ing Illumina reads for subsequent assembly. It is designed around the novel idea of minimizing the number of distinct erroneous k-mers in the output reads and preserving the most...2369 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...atic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good,&nbs...2364 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
...ement and idiogram drawing as well as number of useful functions facilitating the procedure of chromosome analysis," explain the scientists. "The output of the program is Microsoft X...2350 days ago
collinearity: scripts to parse and analyse MCScanX collinearity output
scripts to parse and analyse MCScanX collinearity output2348 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
...transposables-.html?lang=en You can find the original publication in GBE here: https://academic.oup.com/gbe/article/7/4/1192/533768 output examples of quantification an...2344 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...of high context order (typically 20). The method has been approached with a tool (also called SMASH). For visualization, SMASH outputs a SVG image, with an ideogram output architecture, where the patte...2326 days ago
Seal: SEquence ALignment evaluation suite
...erage, sequencing error rate, and indel rate. Applying alignment tools to the genome and the reads through a standardized interface. Parsing the output of the alignment tool and cal...2313 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
...ould be in fasta or fastq format. These sequences will be corrected (e.g. PacBio reads). The corrections will be written to a file Jabba fasta.The output is a file in fasta format wit...1981 days ago