Results for "output"
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collinearity: scripts to parse and analyse MCScanX collinearity output
scripts to parse and analyse MCScanX collinearity outputTags: collinearity, scripts, parse, analyse, MCScanX, collinearity, output
2361 days ago
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
One code to find them all is a set of perl scripts to extract useful information from RepeatMasker about transposable elements, retrieve their sequences and get some quantitative information. Assemble RepeatMasker hits into complete TE copies, including LTR-retrotransposon Retrieve correspond...Tags: perl, tool, conveniently, parse, RepeatMasker, output, files
2175 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher to process SSPACE-LongRead output to fill gaps after the scaffolding. gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6733440/Tags: gapFinisher, reliable, gap, filling, pipeline, SSPACE-LongRead, scaffolder, output
1464 days ago
- The Pango nomenclature is being used by researchers and public health agencies worldwide to track the transmission and spread of SARS-CoV-2, including variants of concern. This website documents all current Pango lineages and their spread, as well as various software tools which can be used by re...
Tags: Pango, Lineage, Analysis, Output, Classification, SARS-CoV2
915 days ago
