Results for "output"
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Parallel Processing with Perl !
...UAL, LOCK_EX or die “cant lock file $!”;print $QUAL “$output”;flock $QUAL, LOCK_UN o...ut interfering with the other process. I again will not suggest writing output from each child process to on...2218 days ago
- The benchmark module is a great tool to know the time the code takes to run. The output is usually in terms of CPU time. This module provides us with a way to optimize our code. With...
2218 days ago
Frequent parameters for bioinformatics tools !
...--subset 1000 (for PacBio) SPAdes --careful --disable-gzip-output --cov-cutoff auto --phred-o...ftools call (SNP detection) --variants-only --skip-variants indels --output-type v --ploidy 1 -c ...1424 days ago
Short-read assembly using Spades !
...--cov-cutoff auto computes the coverage threshold (rather than the default setting, “off”) -o is the output directory Results Move into the output directory and look at the con...963 days ago
Steps to find all the repeats in the genome !
...l -poly -species <species_name> -dir <output_directory> -length <min...he name of the species you are analyzing. <output_directory>: The directory...run it to conveniently parse the RepeatMasker output files. Here's an example of h...387 days ago
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