Results for "output"
Bio-Scripts
Install Parrot Virtual Machine !
...-. --wait Read a keystroke before starting --runtime-prefix -v --verbose -E --pre-process-only -o --output=FILE --output-pbc -O --optimize[=LEVEL...1530 days ago
- ...ult: 8) --merge-assemblies= Merge best contigs from multiple assemblies into file --output= Directory where results are output (will be...
2116 days ago
- ...ch individual file specified in sample_links rule download_reads: output: "rnaseq/raw_data/{sample}.fq...rds.sample] shell: """ curl -L {params.download_link} -o {output} """
1509 days ago
Installing Porechop on Ubuntu !
...ter) porechop -h usage: porechop -i INPUT [-o OUTPUT] [--format {...vely searched for FASTQ files (required) -o OUTPUT, --output OUTPUT...option is on by default when outputting reads into...2099 days ago
Install Python locally on shared Linux server !
...&& make install #Notice the prefix option, it is mandatory for this to work. The value of prefix option is to specify where to put the #related output of make command, by default i...2091 days ago
- ...lents --dry-run may be specified to output the generated command line wi...in germline samples given their counts and the output of DetermineGermlineContigPlo...FO buffer that can be used to buffer input and output streams between programs....
2068 days ago
- (denovo_asm) [jnarayan@hmem00 ~]$ git clone https://github.com/cdunn2001/git-sym.git fatal: destination path 'git-sym' already exists and is not an empty directory. (...
2027 days ago
- # $1 = vcf file # $2 = input bam file # $3 = output QV file module load samtools NUM_BP=`samtools depth $2 | perl -e '$c = 0; while(){chomp; @s = split(/\t/); if(scalar(@s) >=...
1598 days ago
Samtools commands for bioinformatician !
...# converting sam file into bam # -b : output is bam # -S : input is sam # -o : output file name samtools view -b -...ome variants (mpileup command) # -g : output is bcf (binary call format) f...int (total/c)*100}' ### flagstat # output file has two columns: QC-pass...1596 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...r local ICUDT_DIR... icu61/data checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking...1543 days ago
