Results for "output"
Bio-Scripts
syntax: $output = open2(\*CHLD_OUT, \*CHLD_IN, 'command arg1 arg2...TDIN and STDOUT. It can be used in both ways: $output = open2(my $out, my $in, 'com...nd arg1 arg2'); OR without using the shell $output = open2(my $out, my $in, 'com...1157 days ago
Perl script to run awk inside perl
...le) eval '$'.$1.'$2;' while $ARGV[0] =~ /^([A-Za-z_0-9]+=)(.*)/ && shift; # process any FOO=bar switches $, = ' '; # set output field separator $\ = "\n"; # set output record separator while ()...1157 days ago
- #Long reads bedtools bamtofastq -i input.bam -fq output.fastq #For paired-end reads: samtools sort -n input.bam -o input_sorted.bam # sort reads by identifier-name (-n) bedtools bamtofastq -i input_sorted.bam -fq output_r1.fastq -fq2 output_r2.fastq
990 days ago
Tadpole is 250x faster than SPADes assembler !
...may also be comma-delimited lists of files. Output parameters: out= Wr...reads (in other modes). out2= Second output file for paired output. outd...kmer-counting, and again prior to correction. Output will sti...969 days ago
- ...flat query-anchored, no identities and blunt ends, 7 = XML Blast output, 8 = Tabular output, 9 = Tabular output with co...ce to show alignments for (B) [Integer] default = 250 -C Output File for PSI-BLAST Checkpoint...
944 days ago
Downloading mmseqs databases !
...Nucleotide yes https://github.com/lskatz/Kalamari #For example, run the following to download and setup the Swiss-Prot at the output path outpath/swissprot: mm...936 days ago
Rules to run fastp / Snakemake !
..."/{sample}-read_1.fq", rev=INPUT + "/{sample}-read_2.fq" output: fwd=RESULTS + "/fas..."fastp --in1 {input.fwd} --in2 {input.rev} " "--out1 {output.fwd} --out2 {output.rev} --th...895 days ago
- ...cord separator character is a newline. #OFS: OFS command stores the output field separator, which separa...alue of OFS in between each parameter. #ORS: ORS command stores the output record separator, which separ...
888 days ago
Run Pango on your multifasta file !
...8: UserWarning: X has feature names, but DecisionTreeClassifier was fitted without feature names warnings.warn( complete 11/30/2021, 13:10:09 Output file written to: /home/jnaray...881 days ago
- (abhiENV) [abhi@hn1 output_OM824]$ conda create -n mgsc python=3.6 graphviz numpy Collecting packag...# # $ conda deactivate mgsc -i [path to your assembly graph] -o [output directory name]...
818 days ago
